Cuscó A, Pérez D, Viñes J, Fàbregas N, Francino O. (2022). Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation. Microb Genom. 2022 Mar;8(3). doi: https://doi.org/10.1099/mgen.0.000802
Cuscó A, Pérez D, Viñes J, Fàbregas N, Francino O. (2021). Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces. BMC Genomics. 2021 May 6;22(1):330. https://doi.org/10.1186/s12864-021-07607-0
Puigdemont A, D’Andreano S, Ramió-Lluch L, Cuscó A, Francino O, Brazis P. (2021) Effect of an anti-inflammatory pomegranate otic treatment on the clinical evolution and microbiota profile of dogs with otitis externa. Vet Dermatol. 2021 Apr;32(2):158-e37. https://doi.org/10.1111/vde.12930
Zamarian V, Catozzi C, Cuscó A, Stefanello D, Ferrari R, Ceciliani F, Francino O, Sánchez A, Grieco V, Zani D, Talenti A, Crepaldi P, Lecchi C. (2020) Characterization of skin surface and dermal microbiota in dogs with mast cell tumor. Sci Rep. 2020 Jul 28;10(1):12634. https://doi.org/10.1038/s41598-020-69572-0
Catozzi C, Ceciliani F, Lecchi C, Talenti A, Vecchio D, De Carlo E, Grassi C, Sánchez A, Francino O, Cuscó A. (2020) Short communication: Milk microbiota profiling on water buffalo with full-length 16S rRNA using nanopore sequencing. J Dairy Sci. 2020 Mar;103(3):2693-2700. https://doi.org/10.3168/jds.2019-17359
García-Fonticoba, R., Ferrer, L., Francino, O. Cusco, A. (2020) The microbiota of the surface, dermis and subcutaneous tissue of dog skin. anim microbiome 2, 34 (2020). https://doi.org/10.1186/s42523-020-00050-8
Catozzi C, Cusco A, Lecchi C, De Carlo E, Vecchio D, Martuciello A, D’Angelo L, Francino O, Sanchez A, Ceciliani F. (2019) Impact of intramammary inoculation of inactivated Lactobacillus rhamnosus and antibiotics on the milk microbiota of water buffalo with subclinical mastitis. PLoS ONE 14:1 DOI: 10.1371/journal.pone.0210204
Cuscó A, Salas A, Torre C, Francino O. (2019) Shallow metagenomics with Nanopore sequencing in canine fecal microbiota improved bacterial taxonomy and identified an uncultured CrAssphage. bioRxiv. doi: https://doi.org/10.1101/585067
Cuscó A, Catozzi C, Viñes J, Sanchez A, Francino O. (2019) Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon [version 2; peer review: 2 approved, 3 approved with reservations]. F1000Research 2019, 7:1755 (https://doi.org/10.12688/f1000research.16817.2)
Catozzi C, Cusco A, Lecchi C, Talenti A, Martuciello A, Cappelli G, Sanchez A, Francino O, Ceciliani F. (2019) Intra- and inter-individual milk microbiota variability in healthy and infected water buffalo udder quarters. Journal of Dairy Science 102:7476-7482. DOI: 10.3168/jds.2019-16352
Catozzi C, Cusco A, Lecchi C, De Carlo E, Vecchio D, Martuciello A, D’Angelo L, Francino O, Sanchez A, Ceciliani F. (2019) Impact of intramammary inoculation of inactivated Lactobacillus rhamnosus and antibiotics on the milk microbiota of water buffalo with subclinical mastitis. PLoS ONE 14:1 DOI: 10.1371/journal.pone.0210204
Cuscó A, Catozzi C, Viñes J, Sánchez A, Francino O. Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and whole rrn operon. bioRxiv 2018; doi: http://dx.doi.org/10.1101/450734.
Soler C, Goossens T, Bermejo A, Migura- García L, Cusco A, Francino O, et al. Digestive microbiota is different in pigs receiving antimicrobials or a feed additive during the nursery period. PLoS ONE 2018, 13(5): e0197353. doi: https://doi.org/10.1371/journal.pone.0197353.
Cusco A, Belanger JM, Gershony L, Islas-Trejo A, Levy K, Medrano JF, Sánchez A, Oberbauer AM, Francino O. Individual signatures and environmental factors shape skin microbiota on healthy dogs. Microbiome. 2017, 5(1):139. doi: https://doi.org/10.1186/s40168-017-0355-6
Catozzi C, Sanchez Bonastre A, Francino O, Lecchi C, De Carlo E, Vecchio D, Martucciello A, Fraulo P, Bronzo V, Cuscó A, D’Andreano S, Ceciliani F. The microbiota of water buffalo milk during mastitis. PLoS One. 2017, 12(9): e0184710. doi: https://doi.org/10.1371/journal.pone.0184710.
Cusco A, Vines J, D’Andreano S, Riva F, Casellas J, Sanchez A, Francino O. Using MinION to characterize dog skin microbiota through full-length 16S rRNA gene sequencing approach. bioRxiv 2017, doi: https://doi.org/10.1101/167015.
Cuscó A, Sanchez A, Altet L, Ferrer L, Francino O. Individual Signatures Define Canine Skin Microbiota Composition and Variability. Front. Vet. Sci. 2017, doi: https://doi.org/10.3389/fvets.2017.00006.
Cuscó A, Sánchez A, Altet L, Ferrer L, Francino O. Corrigendum: Individual Signatures Define Canine Skin Microbiota Composition and Variability. Front Vet Sci. 2017, 4:119. doi: https://doi.org/10.3389/fvets.2017.00119.
D’Andreano S, Sànchez A, Francino O, Cuscó A, Lecchi C, Grilli G, Giovanardi D, Ceciliani F. Gastrointestinal microbial population of turkey (Meleagris gallopavo) affected by Haemorrhagic Enteritis virus. Poult Sci. 2017, 96(10): 3550-3558. doi: https://doi.org/10.3382/ps/pex139.